J4_8CMJ_008

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

8CMJ|1|AA|A|2657, 8CMJ|1|AA|U|2752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|C|2654
8CMJ|1|AA|U|2655
8CMJ|1|AA|A|2656
8CMJ|1|AA|A|2657
8CMJ|1|AA|G|2658
*
8CMJ|1|AA|U|2712
8CMJ|1|AA|U|2713
8CMJ|1|AA|G|2714
*
8CMJ|1|AA|C|2741
8CMJ|1|AA|C|2742
*
8CMJ|1|AA|G|2751
8CMJ|1|AA|U|2752
8CMJ|1|AA|G|2753

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain F

60S ribosomal protein L21-A

Chain HH

60S ribosomal protein L5

Chain a

60S ribosomal protein L42-A