J4_8CMJ_012

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

UACAU*AUGCUUAAAAU*AUG*CGAA

Length

23 nucleotides

Bulged bases

8CMJ|1|c|C|139, 8CMJ|1|c|A|265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|c|U|137
8CMJ|1|c|A|138
8CMJ|1|c|C|139
8CMJ|1|c|A|140
8CMJ|1|c|U|141
*
8CMJ|1|c|A|173
8CMJ|1|c|U|174
8CMJ|1|c|G|175
8CMJ|1|c|C|176
8CMJ|1|c|U|177
8CMJ|1|c|U|178
8CMJ|1|c|A|179
8CMJ|1|c|A|180
8CMJ|1|c|A|181
8CMJ|1|c|A|182
8CMJ|1|c|U|183
*
8CMJ|1|c|A|202
8CMJ|1|c|U|203
8CMJ|1|c|G|204
*
8CMJ|1|c|C|263
8CMJ|1|c|G|264
8CMJ|1|c|A|265
8CMJ|1|c|A|266

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain h

40S ribosomal protein S4-A

Chain j

40S ribosomal protein S6-A