J4_8CMJ_012
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UACAU*AUGCUUAAAAU*AUG*CGAA
- Length
- 23 nucleotides
- Bulged bases
- 8CMJ|1|c|C|139, 8CMJ|1|c|A|265
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CMJ|1|c|U|137
8CMJ|1|c|A|138
8CMJ|1|c|C|139
8CMJ|1|c|A|140
8CMJ|1|c|U|141
*
8CMJ|1|c|A|173
8CMJ|1|c|U|174
8CMJ|1|c|G|175
8CMJ|1|c|C|176
8CMJ|1|c|U|177
8CMJ|1|c|U|178
8CMJ|1|c|A|179
8CMJ|1|c|A|180
8CMJ|1|c|A|181
8CMJ|1|c|A|182
8CMJ|1|c|U|183
*
8CMJ|1|c|A|202
8CMJ|1|c|U|203
8CMJ|1|c|G|204
*
8CMJ|1|c|C|263
8CMJ|1|c|G|264
8CMJ|1|c|A|265
8CMJ|1|c|A|266
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein S4-A
- Chain j
- 40S ribosomal protein S6-A
Coloring options: