J4_8CRE_003

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

8CRE|1|1|A|1448, 8CRE|1|1|U|1451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_87855.1

Basepair signature

cWW-F-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

8CRE|1|1|C|1447
8CRE|1|1|A|1448
8CRE|1|1|A|1449
8CRE|1|1|A|1450
8CRE|1|1|U|1451
8CRE|1|1|A|1452
8CRE|1|1|U|1453
*
8CRE|1|1|A|1471
8CRE|1|1|G|1472
*
8CRE|1|1|U|1873
8CRE|1|1|G|1874
8CRE|1|1|A|1875
8CRE|1|1|U|1876
*
8CRE|1|1|A|2330
8CRE|1|1|G|2331

Current chains

Chain 1

25S

Nearby chains

Chain AE

60S ribosomal protein L31-B

Chain x

Ribosomal protein L22

Chain z

60S ribosomal protein L19-A