J4_8CRX_009

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

8CRX|1|a|G|1417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CRX_009 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0972

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.2

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8CRX|1|a|G|1386
8CRX|1|a|G|1387
8CRX|1|a|U|1388
8CRX|1|a|U|1389
8CRX|1|a|C|1390
*
8CRX|1|a|G|1414
8CRX|1|a|G|1415
8CRX|1|a|U|1416
8CRX|1|a|G|1417
8CRX|1|a|A|1418
8CRX|1|a|G|1419
*
8CRX|1|a|C|1480
8CRX|1|a|C|1481
*
8CRX|1|a|G|1781
8CRX|1|a|C|1782
8CRX|1|a|C|1783
8CRX|1|a|C|1784
8CRX|1|a|G|1785
8CRX|1|a|U|1786
8CRX|1|a|A|1787
8CRX|1|a|C|1788

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain s

50S ribosomal protein L23