J4_8CVJ_001

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8CVJ|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVJ_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0722

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8CVJ|1|1A|C|268
8CVJ|1|1A|U|269
*
8CVJ|1|1A|G|370
8CVJ|1|1A|A|371
8CVJ|1|1A|G|372
8CVJ|1|1A|U|373
8CVJ|1|1A|A|374
8CVJ|1|1A|C|375
*
8CVJ|1|1A|G|399
8CVJ|1|1A|G|400
8CVJ|1|1A|A|401
8CVJ|1|1A|A|402
8CVJ|1|1A|U|403
8CVJ|1|1A|C|404
8CVJ|1|1A|U|405
8CVJ|1|1A|G|406
*
8CVJ|1|1A|U|421
8CVJ|1|1A|A|422
8CVJ|1|1A|A|423
8CVJ|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9