J4_8CVK_011
3D structure
- PDB id
- 8CVK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8CVK|1|1a|C|121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8CVK_011 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0674
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CVK|1|1a|G|115
8CVK|1|1a|A|116
8CVK|1|1a|G|117
8CVK|1|1a|U|118
8CVK|1|1a|A|119
8CVK|1|1a|A|120
8CVK|1|1a|C|121
8CVK|1|1a|G|122
*
8CVK|1|1a|U|239
8CVK|1|1a|C|240
*
8CVK|1|1a|G|286
8CVK|1|1a|U|287
8CVK|1|1a|A|288
8CVK|1|1a|G|289
*
8CVK|1|1a|C|311
8CVK|1|1a|C|312
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
- Chain 1q
- 30S ribosomal protein S17
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