J4_8CVK_017

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8CVK|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVK_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.1089

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8CVK|1|2A|C|268
8CVK|1|2A|U|269
*
8CVK|1|2A|G|370
8CVK|1|2A|A|371
8CVK|1|2A|G|372
8CVK|1|2A|U|373
8CVK|1|2A|A|374
8CVK|1|2A|C|375
*
8CVK|1|2A|G|399
8CVK|1|2A|G|400
8CVK|1|2A|A|401
8CVK|1|2A|A|402
8CVK|1|2A|U|403
8CVK|1|2A|C|404
8CVK|1|2A|U|405
8CVK|1|2A|G|406
*
8CVK|1|2A|U|421
8CVK|1|2A|A|422
8CVK|1|2A|A|423
8CVK|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9