J4_8CVK_020

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8CVK|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVK_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0778

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8CVK|1|2A|G|1310
8CVK|1|2A|G|1311
8CVK|1|2A|U|1312
8CVK|1|2A|U|1313
8CVK|1|2A|C|1314
*
8CVK|1|2A|G|1338
8CVK|1|2A|G|1339
8CVK|1|2A|U|1340
8CVK|1|2A|U|1341
8CVK|1|2A|A|1342
8CVK|1|2A|G|1343
*
8CVK|1|2A|C|1404
8CVK|1|2A|U|1405
*
8CVK|1|2A|A|1597
8CVK|1|2A|C|1598
8CVK|1|2A|C|1599
8CVK|1|2A|C|1600
8CVK|1|2A|G|1601
8CVK|1|2A|U|1602
8CVK|1|2A|A|1603
8CVK|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23