J4_8CVL_027

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8CVL|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVL_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0501

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8CVL|1|2a|G|115
8CVL|1|2a|A|116
8CVL|1|2a|G|117
8CVL|1|2a|U|118
8CVL|1|2a|A|119
8CVL|1|2a|A|120
8CVL|1|2a|C|121
8CVL|1|2a|G|122
*
8CVL|1|2a|U|239
8CVL|1|2a|C|240
*
8CVL|1|2a|G|286
8CVL|1|2a|U|287
8CVL|1|2a|A|288
8CVL|1|2a|G|289
*
8CVL|1|2a|C|311
8CVL|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17