J4_8CVM_001

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

G(4SU)GG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

8CVM|1|C|4SU|8, 8CVM|1|C|U|47, 8CVM|1|C|C|48

QA status

Modified nucleotides: 4SU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVM_001 not in the Motif Atlas

Homologous match to J4_9DFC_015

Geometric discrepancy: 0.1511

The information below is about J4_9DFC_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8CVM|1|C|G|7
8CVM|1|C|4SU|8
8CVM|1|C|G|9
8CVM|1|C|G|10
*
8CVM|1|C|C|25
8CVM|1|C|G|26
8CVM|1|C|U|27
*
8CVM|1|C|A|43
8CVM|1|C|A|44
8CVM|1|C|G|45
8CVM|1|C|G|46
8CVM|1|C|U|47
8CVM|1|C|C|48
8CVM|1|C|G|49
*
8CVM|1|C|C|65
8CVM|1|C|C|66

Current chains

Chain C

Initiator fMet RNA

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain l

50S ribosomal protein L16