J4_8CVM_003

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAAG*UACC*GUG*UGUAA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8CVM_003 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1184

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8CVM|1|a|U|382
8CVM|1|a|G|383
8CVM|1|a|A|384
8CVM|1|a|A|385
8CVM|1|a|G|386
*
8CVM|1|a|U|401
8CVM|1|a|A|402
8CVM|1|a|C|403
8CVM|1|a|C|404
*
8CVM|1|a|G|408
8CVM|1|a|U|409
8CVM|1|a|G|410
*
8CVM|1|a|U|422
8CVM|1|a|G|423
8CVM|1|a|U|424
8CVM|1|a|A|425
8CVM|1|a|A|426

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain t

50S ribosomal protein L24