J4_8CVM_008

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AUC*GC*GGGAGC*GGUGAGU

Length

18 nucleotides

Bulged bases

8CVM|1|a|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CVM|1|a|A|1624
8CVM|1|a|U|1625
8CVM|1|a|C|1626
*
8CVM|1|a|G|1647
8CVM|1|a|C|1648
*
8CVM|1|a|G|1707
8CVM|1|a|G|1708
8CVM|1|a|G|1709
8CVM|1|a|A|1710
8CVM|1|a|G|1711
8CVM|1|a|C|1712
*
8CVM|1|a|G|1724
8CVM|1|a|G|1725
8CVM|1|a|U|1726
8CVM|1|a|G|1727
8CVM|1|a|A|1728
8CVM|1|a|G|1729
8CVM|1|a|U|1730

Current chains

Chain a

23S ribosomal RNA

Nearby chains