J4_8E30_001

3D structure

PDB id

8E30 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3142

Experimental method

ELECTRON MICROSCOPY

Resolution

1.91 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E30|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E30_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0982

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E30|1|I|C|268
8E30|1|I|C|269
*
8E30|1|I|G|370
8E30|1|I|A|371
8E30|1|I|G|372
8E30|1|I|U|373
8E30|1|I|A|374
8E30|1|I|G|375
*
8E30|1|I|U|399
8E30|1|I|G|400
8E30|1|I|A|401
8E30|1|I|A|402
8E30|1|I|U|403
8E30|1|I|A|404
8E30|1|I|U|405
8E30|1|I|G|406
*
8E30|1|I|C|421
8E30|1|I|A|422
8E30|1|I|A|423
8E30|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains