J4_8E32_011

3D structure

PDB id

8E32 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E32_011 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0914

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8E32|1|I|G|2643
8E32|1|I|G|2644
8E32|1|I|G|2645
8E32|1|I|C|2646
*
8E32|1|I|G|2674
8E32|1|I|A|2675
8E32|1|I|C|2676
*
8E32|1|I|G|2731
8E32|1|I|G|2732
8E32|1|I|A|2733
8E32|1|I|A|2734
8E32|1|I|G|2735
*
8E32|1|I|U|2769
8E32|1|I|G|2770
8E32|1|I|C|2771

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L3

Chain O

50S ribosomal protein L13