J4_8E33_001

3D structure

PDB id

8E33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin analog SAB001

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E33|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E33_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1252

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E33|1|I|C|268
8E33|1|I|C|269
*
8E33|1|I|G|370
8E33|1|I|A|371
8E33|1|I|G|372
8E33|1|I|U|373
8E33|1|I|A|374
8E33|1|I|G|375
*
8E33|1|I|U|399
8E33|1|I|G|400
8E33|1|I|A|401
8E33|1|I|A|402
8E33|1|I|U|403
8E33|1|I|A|404
8E33|1|I|U|405
8E33|1|I|G|406
*
8E33|1|I|C|421
8E33|1|I|A|422
8E33|1|I|A|423
8E33|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains