J4_8E36_001

3D structure

PDB id

8E36 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compound streptogramin A analog 3146

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E36|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E36_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1309

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E36|1|I|C|268
8E36|1|I|C|269
*
8E36|1|I|G|370
8E36|1|I|A|371
8E36|1|I|G|372
8E36|1|I|U|373
8E36|1|I|A|374
8E36|1|I|G|375
*
8E36|1|I|U|399
8E36|1|I|G|400
8E36|1|I|A|401
8E36|1|I|A|402
8E36|1|I|U|403
8E36|1|I|A|404
8E36|1|I|U|405
8E36|1|I|G|406
*
8E36|1|I|C|421
8E36|1|I|A|422
8E36|1|I|A|423
8E36|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains