J4_8E3M_001

3D structure

PDB id

8E3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to L-linker solithromycin conjugate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E3M|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E3M_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1047

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E3M|1|I|C|268
8E3M|1|I|C|269
*
8E3M|1|I|G|370
8E3M|1|I|A|371
8E3M|1|I|G|372
8E3M|1|I|U|373
8E3M|1|I|A|374
8E3M|1|I|G|375
*
8E3M|1|I|U|399
8E3M|1|I|G|400
8E3M|1|I|A|401
8E3M|1|I|A|402
8E3M|1|I|U|403
8E3M|1|I|A|404
8E3M|1|I|U|405
8E3M|1|I|G|406
*
8E3M|1|I|C|421
8E3M|1|I|A|422
8E3M|1|I|A|423
8E3M|1|I|G|424

Current chains

Chain I

50S ribosomal RNA

Nearby chains