J4_8E3O_001

3D structure

PDB id

8E3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to solithromycin and VM1

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E3O|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E3O_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1282

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E3O|1|I|C|268
8E3O|1|I|C|269
*
8E3O|1|I|G|370
8E3O|1|I|A|371
8E3O|1|I|G|372
8E3O|1|I|U|373
8E3O|1|I|A|374
8E3O|1|I|G|375
*
8E3O|1|I|U|399
8E3O|1|I|G|400
8E3O|1|I|A|401
8E3O|1|I|A|402
8E3O|1|I|U|403
8E3O|1|I|A|404
8E3O|1|I|U|405
8E3O|1|I|G|406
*
8E3O|1|I|C|421
8E3O|1|I|A|422
8E3O|1|I|A|423
8E3O|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains