J4_8E41_006

3D structure

PDB id

8E41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to tiamulin and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.13 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8E41|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E41_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0416

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8E41|1|I|U|1313
8E41|1|I|C|1314
*
8E41|1|I|G|1338
8E41|1|I|G|1339
8E41|1|I|U|1340
8E41|1|I|G|1341
8E41|1|I|A|1342
8E41|1|I|G|1343
*
8E41|1|I|C|1404
8E41|1|I|U|1405
*
8E41|1|I|A|1597
8E41|1|I|A|1598
8E41|1|I|U|1599
8E41|1|I|C|1600
8E41|1|I|G|1601
8E41|1|I|U|1602
8E41|1|I|A|1603

Current chains

Chain I

50S ribosomal RNA

Nearby chains