J4_8E44_006

3D structure

PDB id

8E44 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC09

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8E44|1|I|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E44_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0535

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8E44|1|I|U|1313
8E44|1|I|C|1314
*
8E44|1|I|G|1338
8E44|1|I|G|1339
8E44|1|I|U|1340
8E44|1|I|G|1341
8E44|1|I|A|1342
8E44|1|I|G|1343
*
8E44|1|I|C|1404
8E44|1|I|U|1405
*
8E44|1|I|A|1597
8E44|1|I|A|1598
8E44|1|I|U|1599
8E44|1|I|C|1600
8E44|1|I|G|1601
8E44|1|I|U|1602
8E44|1|I|A|1603

Current chains

Chain I

23S ribosomal RNA

Nearby chains