J4_8E45_001

3D structure

PDB id

8E45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC17

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E45|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E45_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1239

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E45|1|I|C|268
8E45|1|I|C|269
*
8E45|1|I|G|370
8E45|1|I|A|371
8E45|1|I|G|372
8E45|1|I|U|373
8E45|1|I|A|374
8E45|1|I|G|375
*
8E45|1|I|U|399
8E45|1|I|G|400
8E45|1|I|A|401
8E45|1|I|A|402
8E45|1|I|U|403
8E45|1|I|A|404
8E45|1|I|U|405
8E45|1|I|G|406
*
8E45|1|I|C|421
8E45|1|I|A|422
8E45|1|I|A|423
8E45|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains