J4_8E46_001

3D structure

PDB id

8E46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to antibiotic analog SLC21

Experimental method

ELECTRON MICROSCOPY

Resolution

2.32 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8E46|1|I|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8E46_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1218

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8E46|1|I|C|268
8E46|1|I|C|269
*
8E46|1|I|G|370
8E46|1|I|A|371
8E46|1|I|G|372
8E46|1|I|U|373
8E46|1|I|A|374
8E46|1|I|G|375
*
8E46|1|I|U|399
8E46|1|I|G|400
8E46|1|I|A|401
8E46|1|I|A|402
8E46|1|I|U|403
8E46|1|I|A|404
8E46|1|I|U|405
8E46|1|I|G|406
*
8E46|1|I|C|421
8E46|1|I|A|422
8E46|1|I|A|423
8E46|1|I|G|424

Current chains

Chain I

23S ribosomal RNA

Nearby chains