J4_8EIU_001

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8EIU|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EIU_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1083

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8EIU|1|A|G|115
8EIU|1|A|A|116
8EIU|1|A|G|117
8EIU|1|A|U|118
8EIU|1|A|A|119
8EIU|1|A|A|120
8EIU|1|A|U|121
8EIU|1|A|G|122
*
8EIU|1|A|U|239
8EIU|1|A|G|240
*
8EIU|1|A|C|286
8EIU|1|A|U|287
8EIU|1|A|A|288
8EIU|1|A|G|289
*
8EIU|1|A|C|311
8EIU|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17