J4_8EIU_002

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8EIU|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EIU_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1135

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EIU|1|A|G|142
8EIU|1|A|A|143
8EIU|1|A|G|144
*
8EIU|1|A|C|178
8EIU|1|A|A|179
8EIU|1|A|U|180
8EIU|1|A|A|181
8EIU|1|A|A|182
8EIU|1|A|C|183
8EIU|1|A|G|184
*
8EIU|1|A|C|193
8EIU|1|A|C|194
8EIU|1|A|A|195
8EIU|1|A|A|196
8EIU|1|A|A|197
8EIU|1|A|G|198
*
8EIU|1|A|U|219
8EIU|1|A|G|220
8EIU|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20