J4_8EIU_006

3D structure

PDB id

8EIU (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A-loop mutations U2554C and U2555C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8EIU|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EIU_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1224

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8EIU|1|a|C|268
8EIU|1|a|C|269
*
8EIU|1|a|G|370
8EIU|1|a|A|371
8EIU|1|a|G|372
8EIU|1|a|U|373
8EIU|1|a|A|374
8EIU|1|a|G|375
*
8EIU|1|a|U|399
8EIU|1|a|G|400
8EIU|1|a|A|401
8EIU|1|a|A|402
8EIU|1|a|U|403
8EIU|1|a|A|404
8EIU|1|a|U|405
8EIU|1|a|G|406
*
8EIU|1|a|C|421
8EIU|1|a|A|422
8EIU|1|a|A|423
8EIU|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L9

Chain w

50S ribosomal protein L28