J4_8EKB_001

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8EKB|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EKB_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0565

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8EKB|1|1A|C|268
8EKB|1|1A|U|269
*
8EKB|1|1A|G|370
8EKB|1|1A|A|371
8EKB|1|1A|G|372
8EKB|1|1A|U|373
8EKB|1|1A|A|374
8EKB|1|1A|C|375
*
8EKB|1|1A|G|399
8EKB|1|1A|G|400
8EKB|1|1A|A|401
8EKB|1|1A|A|402
8EKB|1|1A|U|403
8EKB|1|1A|C|404
8EKB|1|1A|U|405
8EKB|1|1A|G|406
*
8EKB|1|1A|U|421
8EKB|1|1A|A|422
8EKB|1|1A|A|423
8EKB|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9