J4_8EKB_004

3D structure

PDB id

8EKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, deacylated P-site tRNAmet, and thermorubin at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8EKB|1|1A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EKB_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0524

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8EKB|1|1A|G|1310
8EKB|1|1A|G|1311
8EKB|1|1A|U|1312
8EKB|1|1A|U|1313
8EKB|1|1A|C|1314
*
8EKB|1|1A|G|1338
8EKB|1|1A|G|1339
8EKB|1|1A|U|1340
8EKB|1|1A|U|1341
8EKB|1|1A|A|1342
8EKB|1|1A|G|1343
*
8EKB|1|1A|C|1404
8EKB|1|1A|U|1405
*
8EKB|1|1A|A|1597
8EKB|1|1A|C|1598
8EKB|1|1A|C|1599
8EKB|1|1A|C|1600
8EKB|1|1A|G|1601
8EKB|1|1A|U|1602
8EKB|1|1A|A|1603
8EKB|1|1A|C|1604

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23