J4_8EKC_013

3D structure

PDB id

8EKC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome bound to thermorubin, deacylated P-site tRNAfMet and aminoacylated A-site Phe-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8EKC|1|a|C|183, 8EKC|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EKC_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2095

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EKC|1|a|G|142
8EKC|1|a|A|143
8EKC|1|a|G|144
*
8EKC|1|a|C|178
8EKC|1|a|A|179
8EKC|1|a|U|180
8EKC|1|a|A|181
8EKC|1|a|A|182
8EKC|1|a|C|183
8EKC|1|a|G|184
*
8EKC|1|a|C|193
8EKC|1|a|C|194
8EKC|1|a|A|195
8EKC|1|a|A|196
8EKC|1|a|A|197
8EKC|1|a|G|198
*
8EKC|1|a|U|219
8EKC|1|a|G|220
8EKC|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20