J4_8EMM_001

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8EMM|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EMM_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.0972

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8EMM|1|A|G|115
8EMM|1|A|A|116
8EMM|1|A|G|117
8EMM|1|A|U|118
8EMM|1|A|A|119
8EMM|1|A|A|120
8EMM|1|A|U|121
8EMM|1|A|G|122
*
8EMM|1|A|U|239
8EMM|1|A|G|240
*
8EMM|1|A|C|286
8EMM|1|A|U|287
8EMM|1|A|A|288
8EMM|1|A|G|289
*
8EMM|1|A|C|311
8EMM|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17