J4_8EMM_002

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8EMM|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EMM_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1654

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EMM|1|A|G|142
8EMM|1|A|A|143
8EMM|1|A|G|144
*
8EMM|1|A|C|178
8EMM|1|A|A|179
8EMM|1|A|U|180
8EMM|1|A|A|181
8EMM|1|A|A|182
8EMM|1|A|C|183
8EMM|1|A|G|184
*
8EMM|1|A|C|193
8EMM|1|A|C|194
8EMM|1|A|A|195
8EMM|1|A|A|196
8EMM|1|A|A|197
8EMM|1|A|G|198
*
8EMM|1|A|U|219
8EMM|1|A|G|220
8EMM|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20