J4_8EMM_011

3D structure

PDB id

8EMM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

8EMM|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EMM_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0399

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8EMM|1|a|U|1313
8EMM|1|a|C|1314
*
8EMM|1|a|G|1338
8EMM|1|a|G|1339
8EMM|1|a|U|1340
8EMM|1|a|G|1341
8EMM|1|a|A|1342
8EMM|1|a|G|1343
*
8EMM|1|a|C|1404
8EMM|1|a|U|1405
*
8EMM|1|a|A|1597
8EMM|1|a|A|1598
8EMM|1|a|U|1599
8EMM|1|a|C|1600
8EMM|1|a|G|1601
8EMM|1|a|U|1602
8EMM|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

50S ribosomal protein L23