J4_8EUB_009

3D structure

PDB id

8EUB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2 and GDP, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EUB_009 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.0751

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8EUB|1|A1|U|3010
8EUB|1|A1|A|3011
8EUB|1|A1|A|3012
*
8EUB|1|A1|U|3042
8EUB|1|A1|C|3043
*
8EUB|1|A1|G|3098
8EUB|1|A1|C|3099
8EUB|1|A1|U|3100
*
8EUB|1|A1|A|3134
8EUB|1|A1|U|3135
8EUB|1|A1|G|3136

Current chains

Chain A1

28S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L16-A

Chain AV

60S ribosomal protein L23-A