J4_8EV6_004

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8EV6|1|1A|U|1387

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EV6_004 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0678

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8EV6|1|1A|G|1356
8EV6|1|1A|G|1357
8EV6|1|1A|U|1358
8EV6|1|1A|U|1359
8EV6|1|1A|C|1360
*
8EV6|1|1A|G|1384
8EV6|1|1A|G|1385
8EV6|1|1A|U|1386
8EV6|1|1A|U|1387
8EV6|1|1A|A|1388
8EV6|1|1A|G|1389
*
8EV6|1|1A|C|1450
8EV6|1|1A|U|1451
*
8EV6|1|1A|A|1643
8EV6|1|1A|C|1644
8EV6|1|1A|C|1645
8EV6|1|1A|C|1646
8EV6|1|1A|G|1647
8EV6|1|1A|U|1648
8EV6|1|1A|A|1649
8EV6|1|1A|C|1650

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23