J4_8EV6_017

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8EV6|1|2A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EV6_017 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0806

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8EV6|1|2A|C|268
8EV6|1|2A|U|269
*
8EV6|1|2A|G|370
8EV6|1|2A|A|371
8EV6|1|2A|G|372
8EV6|1|2A|U|373
8EV6|1|2A|A|374
8EV6|1|2A|C|375
*
8EV6|1|2A|G|399
8EV6|1|2A|G|400
8EV6|1|2A|A|401
8EV6|1|2A|A|402
8EV6|1|2A|U|403
8EV6|1|2A|C|404
8EV6|1|2A|U|405
8EV6|1|2A|G|406
*
8EV6|1|2A|U|421
8EV6|1|2A|A|422
8EV6|1|2A|A|423
8EV6|1|2A|G|424

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2I

50S ribosomal protein L9