J4_8EV6_021

3D structure

PDB id

8EV6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

2.946 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

8EV6|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EV6_021 not in the Motif Atlas

Homologous match to J4_9DFE_005

Geometric discrepancy: 0.076

The information below is about J4_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8EV6|1|2A|U|1313
8EV6|1|2A|C|1314
*
8EV6|1|2A|G|1338
8EV6|1|2A|G|1339
8EV6|1|2A|U|1340
8EV6|1|2A|U|1341
8EV6|1|2A|A|1342
8EV6|1|2A|G|1343
*
8EV6|1|2A|C|1404
8EV6|1|2A|U|1405
*
8EV6|1|2A|A|1597
8EV6|1|2A|C|1598
8EV6|1|2A|C|1599
8EV6|1|2A|C|1600
8EV6|1|2A|G|1601
8EV6|1|2A|U|1602
8EV6|1|2A|A|1603

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23