J4_8EV7_001
3D structure
- PDB id
- 8EV7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with kanamycin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.89 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 8EV7|1|1A|U|432
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EV7_001 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.062
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8EV7|1|1A|C|257
8EV7|1|1A|U|258
*
8EV7|1|1A|G|397
8EV7|1|1A|A|398
8EV7|1|1A|G|399
8EV7|1|1A|U|400
8EV7|1|1A|A|401
8EV7|1|1A|C|402
*
8EV7|1|1A|G|426
8EV7|1|1A|G|427
8EV7|1|1A|A|428
8EV7|1|1A|A|429
8EV7|1|1A|U|430
8EV7|1|1A|C|431
8EV7|1|1A|U|432
8EV7|1|1A|G|433
*
8EV7|1|1A|U|448
8EV7|1|1A|A|449
8EV7|1|1A|A|450
8EV7|1|1A|G|451
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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