J4_8EVP_007
3D structure
- PDB id
- 8EVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 8EVP|1|A1|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EVP_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0612
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8EVP|1|A1|C|2192
8EVP|1|A1|U|2193
8EVP|1|A1|G|2194
*
8EVP|1|A1|C|2248
8EVP|1|A1|G|2249
*
8EVP|1|A1|C|2267
8EVP|1|A1|U|2268
8EVP|1|A1|U|2269
8EVP|1|A1|A|2270
8EVP|1|A1|A|2271
8EVP|1|A1|G|2272
8EVP|1|A1|G|2273
8EVP|1|A1|U|2274
8EVP|1|A1|A|2275
8EVP|1|A1|G|2276
*
8EVP|1|A1|U|2310
8EVP|1|A1|G|2311
8EVP|1|A1|A|2312
8EVP|1|A1|A|2313
8EVP|1|A1|U|2314
8EVP|1|A1|G|2315
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain EC
- Internal ribosome entry site
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