J4_8EWC_011
3D structure
- PDB id
- 8EWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.45 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 8EWC|1|B5|A|623, 8EWC|1|B5|A|1026, 8EWC|1|B5|C|1028, 8EWC|1|B5|U|1029, 8EWC|1|B5|A|1030, 8EWC|1|B5|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8EWC_011 not in the Motif Atlas
- Homologous match to J4_8C3A_022
- Geometric discrepancy: 0.0596
- The information below is about J4_8C3A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.4
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8EWC|1|B5|A|622
8EWC|1|B5|A|623
8EWC|1|B5|G|624
*
8EWC|1|B5|C|975
8EWC|1|B5|G|976
8EWC|1|B5|A|977
8EWC|1|B5|A|978
8EWC|1|B5|A|979
8EWC|1|B5|G|980
*
8EWC|1|B5|C|1021
8EWC|1|B5|C|1022
8EWC|1|B5|A|1023
8EWC|1|B5|U|1024
8EWC|1|B5|A|1025
8EWC|1|B5|A|1026
8EWC|1|B5|A|1027
8EWC|1|B5|C|1028
8EWC|1|B5|U|1029
8EWC|1|B5|A|1030
8EWC|1|B5|U|1031
8EWC|1|B5|G|1032
*
8EWC|1|B5|U|1103
8EWC|1|B5|U|1104
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain An
- 60S ribosomal protein L41-A
- Chain BL
- 40S ribosomal protein S11-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain BW
- RPS22A isoform 1
- Chain BX
- 40S ribosomal protein S23-A
- Chain Ba
- RPS26B isoform 1
Coloring options: