J4_8EYQ_001

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8EYQ|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EYQ_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2529

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8EYQ|1|A|G|115
8EYQ|1|A|A|116
8EYQ|1|A|G|117
8EYQ|1|A|U|118
8EYQ|1|A|A|119
8EYQ|1|A|A|120
8EYQ|1|A|U|121
8EYQ|1|A|G|122
*
8EYQ|1|A|U|239
8EYQ|1|A|G|240
*
8EYQ|1|A|C|286
8EYQ|1|A|U|287
8EYQ|1|A|A|288
8EYQ|1|A|G|289
*
8EYQ|1|A|C|311
8EYQ|1|A|C|312

Current chains

Chain A

16S_rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17