J4_8EYQ_002

3D structure

PDB id

8EYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA_h44_inactive_conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8EYQ|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EYQ_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1613

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EYQ|1|A|G|142
8EYQ|1|A|A|143
8EYQ|1|A|G|144
*
8EYQ|1|A|C|178
8EYQ|1|A|A|179
8EYQ|1|A|U|180
8EYQ|1|A|A|181
8EYQ|1|A|A|182
8EYQ|1|A|C|183
8EYQ|1|A|G|184
*
8EYQ|1|A|C|193
8EYQ|1|A|C|194
8EYQ|1|A|A|195
8EYQ|1|A|A|196
8EYQ|1|A|A|197
8EYQ|1|A|G|198
*
8EYQ|1|A|U|219
8EYQ|1|A|G|220
8EYQ|1|A|C|221

Current chains

Chain A

16S_rRNA

Nearby chains

Chain T

30S ribosomal protein S20