J4_8EYT_002

3D structure

PDB id

8EYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S_delta_ksgA+KsgA complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8EYT|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8EYT_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1092

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8EYT|1|A|G|142
8EYT|1|A|A|143
8EYT|1|A|G|144
*
8EYT|1|A|C|178
8EYT|1|A|A|179
8EYT|1|A|U|180
8EYT|1|A|A|181
8EYT|1|A|A|182
8EYT|1|A|C|183
8EYT|1|A|G|184
*
8EYT|1|A|C|193
8EYT|1|A|C|194
8EYT|1|A|A|195
8EYT|1|A|A|196
8EYT|1|A|A|197
8EYT|1|A|G|198
*
8EYT|1|A|U|219
8EYT|1|A|G|220
8EYT|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20