J4_8FC4_024

3D structure

PDB id

8FC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8FC4|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC4_024 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0567

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FC4|1|2a|G|115
8FC4|1|2a|A|116
8FC4|1|2a|G|117
8FC4|1|2a|U|118
8FC4|1|2a|A|119
8FC4|1|2a|A|120
8FC4|1|2a|C|121
8FC4|1|2a|G|122
*
8FC4|1|2a|U|239
8FC4|1|2a|C|240
*
8FC4|1|2a|G|286
8FC4|1|2a|U|287
8FC4|1|2a|A|288
8FC4|1|2a|G|289
*
8FC4|1|2a|C|311
8FC4|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17