J4_8FC5_016

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

8FC5|1|2A|G|1271, 8FC5|1|2A|A|1272, 8FC5|1|2A|U|1273, 8FC5|1|2A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC5_016 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0505

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8FC5|1|2A|C|1270
8FC5|1|2A|G|1271
8FC5|1|2A|A|1272
8FC5|1|2A|U|1273
8FC5|1|2A|A|1274
8FC5|1|2A|A|1275
8FC5|1|2A|A|1276
*
8FC5|1|2A|U|1294
8FC5|1|2A|C|1295
*
8FC5|1|2A|G|1645
8FC5|1|2A|C|1646
8FC5|1|2A|G|1647
8FC5|1|2A|C|1648
*
8FC5|1|2A|G|2009
8FC5|1|2A|G|2010

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2R

50S ribosomal protein L17

Chain 2W

50S ribosomal protein L22