J4_8FC5_017

3D structure

PDB id

8FC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8FC5|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FC5_017 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0603

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8FC5|1|2A|G|1310
8FC5|1|2A|G|1311
8FC5|1|2A|U|1312
8FC5|1|2A|U|1313
8FC5|1|2A|C|1314
*
8FC5|1|2A|G|1338
8FC5|1|2A|G|1339
8FC5|1|2A|U|1340
8FC5|1|2A|U|1341
8FC5|1|2A|A|1342
8FC5|1|2A|G|1343
*
8FC5|1|2A|C|1404
8FC5|1|2A|U|1405
*
8FC5|1|2A|A|1597
8FC5|1|2A|C|1598
8FC5|1|2A|C|1599
8FC5|1|2A|C|1600
8FC5|1|2A|G|1601
8FC5|1|2A|U|1602
8FC5|1|2A|A|1603
8FC5|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23