J4_8FIZ_001

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8FIZ|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FIZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.278

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FIZ|1|AA|G|115
8FIZ|1|AA|A|116
8FIZ|1|AA|G|117
8FIZ|1|AA|U|118
8FIZ|1|AA|A|119
8FIZ|1|AA|A|120
8FIZ|1|AA|U|121
8FIZ|1|AA|G|122
*
8FIZ|1|AA|U|239
8FIZ|1|AA|G|240
*
8FIZ|1|AA|C|286
8FIZ|1|AA|U|287
8FIZ|1|AA|A|288
8FIZ|1|AA|G|289
*
8FIZ|1|AA|C|311
8FIZ|1|AA|C|312

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AO

30S ribosomal protein S16

Chain AS

30S ribosomal protein S17