J4_8FIZ_004

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8FIZ|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FIZ_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0997

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8FIZ|1|BA|C|268
8FIZ|1|BA|C|269
*
8FIZ|1|BA|G|370
8FIZ|1|BA|A|371
8FIZ|1|BA|G|372
8FIZ|1|BA|U|373
8FIZ|1|BA|A|374
8FIZ|1|BA|G|375
*
8FIZ|1|BA|U|399
8FIZ|1|BA|G|400
8FIZ|1|BA|A|401
8FIZ|1|BA|A|402
8FIZ|1|BA|U|403
8FIZ|1|BA|A|404
8FIZ|1|BA|U|405
8FIZ|1|BA|G|406
*
8FIZ|1|BA|C|421
8FIZ|1|BA|A|422
8FIZ|1|BA|A|423
8FIZ|1|BA|G|424

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BK

50S ribosomal protein L9

Chain DE

50S ribosomal protein L28