J4_8FIZ_007

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

8FIZ|1|BA|G|1271, 8FIZ|1|BA|A|1272, 8FIZ|1|BA|U|1273, 8FIZ|1|BA|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8FIZ_007 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1171

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8FIZ|1|BA|C|1270
8FIZ|1|BA|G|1271
8FIZ|1|BA|A|1272
8FIZ|1|BA|U|1273
8FIZ|1|BA|A|1274
8FIZ|1|BA|A|1275
8FIZ|1|BA|A|1276
*
8FIZ|1|BA|U|1294
8FIZ|1|BA|C|1295
*
8FIZ|1|BA|G|1645
8FIZ|1|BA|C|1646
8FIZ|1|BA|U|1647
8FIZ|1|BA|U|1648
*
8FIZ|1|BA|A|2009
8FIZ|1|BA|G|2010

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L32

Chain BV

50S ribosomal protein L17

Chain BZ

50S ribosomal protein L22