J4_8FIZ_015
3D structure
- PDB id
- 8FIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8FIZ|1|BB|U|8, 8FIZ|1|BB|U|48, 8FIZ|1|BB|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FIZ_015 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.2107
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
8FIZ|1|BB|G|7
8FIZ|1|BB|U|8
8FIZ|1|BB|G|9
8FIZ|1|BB|G|10
*
8FIZ|1|BB|C|26
8FIZ|1|BB|G|27
8FIZ|1|BB|U|28
*
8FIZ|1|BB|A|44
8FIZ|1|BB|A|45
8FIZ|1|BB|G|46
8FIZ|1|BB|G|47
8FIZ|1|BB|U|48
8FIZ|1|BB|C|49
8FIZ|1|BB|G|50
*
8FIZ|1|BB|C|66
8FIZ|1|BB|C|67
Current chains
- Chain BB
- P-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AE
- 30S ribosomal protein S13
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BU
- 50S ribosomal protein L16
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