J4_8FKY_003
3D structure
- PDB id
- 8FKY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8FKY|1|L3|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8FKY_003 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.099
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FKY|1|L3|G|2406
8FKY|1|L3|G|2407
8FKY|1|L3|U|2408
8FKY|1|L3|U|2409
8FKY|1|L3|C|2410
*
8FKY|1|L3|G|2434
8FKY|1|L3|G|2435
8FKY|1|L3|U|2436
8FKY|1|L3|C|2437
8FKY|1|L3|A|2438
8FKY|1|L3|G|2439
*
8FKY|1|L3|U|2538
8FKY|1|L3|C|2539
*
8FKY|1|L3|G|2777
8FKY|1|L3|G|2778
8FKY|1|L3|C|2779
8FKY|1|L3|C|2780
8FKY|1|L3|G|2781
8FKY|1|L3|U|2782
8FKY|1|L3|A|2783
8FKY|1|L3|C|2784
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L1
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L23a
- Chain LS
- 60S ribosomal protein L35
- Chain LW
- 60S ribosomal protein L37
- Chain SM
- Pescadillo homolog
Coloring options: