J4_8FKZ_004

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

8FKZ|1|L3|A|2366, 8FKZ|1|L3|U|2369, 8FKZ|1|L3|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKZ|1|L3|C|2365
8FKZ|1|L3|A|2366
8FKZ|1|L3|A|2367
8FKZ|1|L3|A|2368
8FKZ|1|L3|U|2369
8FKZ|1|L3|A|2370
8FKZ|1|L3|U|2371
*
8FKZ|1|L3|A|2389
8FKZ|1|L3|G|2390
8FKZ|1|L3|G|2391
*
8FKZ|1|L3|C|2824
8FKZ|1|L3|A|2825
8FKZ|1|L3|U|2826
8FKZ|1|L3|G|2827
8FKZ|1|L3|U|2828
8FKZ|1|L3|U|2829
*
8FKZ|1|L3|A|3856
8FKZ|1|L3|G|3857

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LD

60S ribosomal protein L19

Chain LP

60S ribosomal protein L31

Chain SR

GTP-binding protein 4